Package index

All functions

computeRankedMatrix()

Compute Ranked Gene Expression Matrix

evaluatePredictionPerformance()

Evaluate Prediction Accuracy and Confusion by Cell Type

extractData()

Extract Expression Matrix from Seurat, SummarizedExperiment, or Matrix

factorSorted()

Order factor levels by frequency

filterLowConfidenceCells()

Tag Low-Confidence Predictions and Add Status Column

maskTopKGenes()

Mask Non-Top-K Genes in Each Cell or Spot

optimizeConfidenceThreshold()

Optimize Confidence Threshold for Cell Type Prediction

predictRankModel()

Predict Cell Types, Probabilities, or Confidence Scores

RankMap()

RankMap: Train and Predict Cell Types Using Top-Ranked Genes

sampleCellsByType()

Sample Cells by Cell Type with Minimum Representation

trainRankModel()

Train Multinomial Rank-Based Model