Changelog

Source: NEWS.md

SpNeigh 0.99.43

• Updated CITATION file
• Added Bioconductor installation instructions to the vignette and README

SpNeigh 0.99.42

• Updated extractCoords.data.frame() implementation

SpNeigh 0.99.41

• Renamed functions to follow lowerCamelCase convention
• Renamed my_theme_ggplot() to theme_spneigh()
• Renamed my_color_15 to colors15_cheng
• Implemented extractCoords() as an S3 generic
• Updated faceting implementation

SpNeigh 0.99.2

• Added CITATION file

SpNeigh 0.99.1

• Made functions compatible with SpatialExperiment objects
• Added script in inst/scripts to document data in inst/extdata

SpNeigh 0.99.0

Initial Bioconductor submission

New Features

• Introduced the RunSpatialDE() function for spatial differential expression using spatial weights.
• Added ComputeSpatialEnrichmentIndex() for enrichment quantification.
• Implemented GetBoundary(), GetRingRegion(), and RemoveOutliers() for spatial region detection.
• Added PlotSpatialExpression() and other visualization tools.