Cheng, J., Chow, P., and Liu, N. (2026). "SpNeigh: spatial neighborhood and differential expression analysis for high-resolution spatial transcriptomics." NAR Genomics and Bioinformatics. 8(2), lqag039.
Pascual, R., Cheng, J. et al (2025). "Fibroblast hierarchy dynamics during mammary gland morphogenesis and tumorigenesis." The EMBO Journal. 1-35.
Chin, H. S., Cheng, J. et al (2025). "MCL‑1 safeguards activated hair follicle stem cells to enable adult hair regeneration." Nature Communications. 16(1), 2829.
Cheng, J., Jin, X., Smyth, G. K., and Chen, Y. (2025). "Benchmarking cell type annotation methods for 10x Xenium spatial transcriptomics data." BMC Bioinformatics. 26(1), 22.
Ang, C. H., Arandjelovic, P., Cheng, J. et al. (2025). "Self-maintenance of zonal hepatocytes during adult homeostasis and their complex plasticity upon distinct liver injuries." Cell Reports. 44(1)
Cheng, J., Smyth, G. K., and Chen, Y. (2023). "Unraveling the timeline of gene expression: A pseudotemporal trajectory analysis of single-cell RNA sequencing data." F1000 Research. 12.
Cheng, J. et al. (2018). "Integrative analysis of DNA methylation and gene expression reveals hepatocellular carcinoma-specific diagnostic biomarkers." Genome Medicine. 10, 1-11.
Talk at The Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
Talk at The Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
Talk at RMIT University, Melbourne, Australia
Talk at The Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia