Datasets

Data for example analyses

anno_signature_genes_mouse

Annotation of signature genes of different cell types of mouse mammary gland

example_dge_data

An example dataset used in the example codes

example_seu

An example single cell RNA-Seq dataset

Data preparing

Funtions for generating data for ternary plot from 10x scRNA-Seq data, Fluidigm C1 scRNA-Seq data or bulk RNA-Seq data

generate_data_for_ternary()

Generate data for ternary plot

calculate_cv_by_row()

Calculate the coefficient of variation (CV)

estimate_optimized_cutoffs()

Estimate the optimized cut-off

Plotting

Functions for drawing ternary plots

vcdTernaryPlot()

Draw a ternary plot

prepare_layout_matrix()

Generate layout matrix for gridExtra::grid.arrange